GgaEX1007023 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16829177-16832099:-
Coord C1 exon
chr7:16832030-16832099
Coord A exon
chr7:16831123-16831184
Coord C2 exon
chr7:16829177-16829266
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTCTGTTTATTAGGAT
3' ss Score
9.97
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGGCTTGGCAGCTGGAGAAGATAATGGACAGAGAGGATATATGCTGACGTTTGTCATTGCTTACCTTCGG
Seq A exon
GATCTGGGCCTGGATTACTATGTAATAGGAGAGTCGTTTGAGACATCTGTTCCTTGGGATAG
Seq C2 exon
GGTTTTAGACCTCTGCAGGAATGTGAAGGAAAGGATAGTAAGAGAATGCAAAGAAAAAGGTGTTCAATTTGCTCCCTTTTCCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'21-29,'21-28,22-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(8.4=100)
A:
PF0291314=FAD-oxidase_C=FE(7.3=100)
C2:
PF0291314=FAD-oxidase_C=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCAGCTGGAGAAGATA
R:
AGGGAGCAAATTGAACACCTT
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]