RnoEX6017470 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62719200-62722960:+
Coord C1 exon
chr3:62719200-62719269
Coord A exon
chr3:62721360-62721421
Coord C2 exon
chr3:62722871-62722960
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTGTGTCTTTACAGGAT
3' ss Score
12
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGTCTGGCTGCTGGAGAAGATAACGGGCAGAGGGGTTATTTGCTGACTTATGTCATTGCATACATGCGT
Seq A exon
GATTTGGGTTTGGAATACTATGTAGTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq C2 exon
GGTTATAGATCTGTGTAGAAATGTAAAAGAAAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTTGCGCCTCTTTCTACGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'30-26,'30-25,32-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(12.4=100)
A:
PF0291314=FAD-oxidase_C=FE(10.8=100)
C2:
PF0291314=FAD-oxidase_C=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATAACGGGCAGAGGGGTT
R:
AAGAGGCGCAAACTGAACTCC
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]