HsaEX0003140 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177505506-177521368:+
Coord C1 exon
chr2:177505506-177505575
Coord A exon
chr2:177507970-177508031
Coord C2 exon
chr2:177521269-177521368
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTGTCTTAATAGGAC
3' ss Score
10.47
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGGTTGGCAGCTGGAGAAGATAATGGACAGAGAGGTTATTTGCTGACCTATGTTATTGCATACATTCGA
Seq A exon
GACTTGGCTTTGGAATACTATGTATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCTTGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTATTTGAACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-17/19=16-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(8.4=100)
A:
PF0291314=FAD-oxidase_C=FE(7.3=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGCAGCTGGAGAAGATA
R:
AGTGGGTCACTAATTCCCCTGT
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development