DreEX6034720 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1594231-1598793:-
Coord C1 exon
chr9:1598732-1598793
Coord A exon
chr9:1596836-1596925
Coord C2 exon
chr9:1594231-1594330
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTATTCTCTCTCGTTCAGGGT
3' ss Score
10.32
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GATTTGGGAATGGATTACTATGTGATCGGTGAGTCGTTTGAGACGTCTGTGCCTTGGGACAG
Seq A exon
GGTGTTGGATTTGTGTCGAAATGTAAAGGAGAGGATAATAAGAGAGTGTAAAGAGAGAGGAGTGCAGTTCCCACCGCTGTCCACATGCAG
Seq C2 exon
AGTCACACAGACGTATGACGCTGGTGCTTGTGTGTATTTCTACTTTGCCTTTAATTACCGGGGTCTGAGTGATCCAGTTCACGTCTACGAACAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAATGGATTACTATGTGATCGG
R:
CTCCACTTGTTCGTAGACGTGA
Band lengths:
159-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]