BtaEX6008925 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19360948-19369248:-
Coord C1 exon
chr2:19369187-19369248
Coord A exon
chr2:19364349-19364438
Coord C2 exon
chr2:19360948-19361047
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTCCATTCTTGTTTTCTAGGGT
3' ss Score
10.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTTGGGTTTGGAATACTATATATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq A exon
GGTTGTAGATCTCTGTAGAAATGTAAAAGAAAGAATAACAAGGGAATGCAAAGAGAAGGGTGTTCAGTTTGCTCCTCTTTCTACATGCAG
Seq C2 exon
GGTGACACAGACTTACGACGCAGGTGCGTGTATCTATTTCTACTTTGCCTTTAACTACAGGGGAATCAGTGATCCACTGACTGTGTTTGAACAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897-'23-23,'23-21,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAATCTTTTGAGACTTCTGCT
R:
TCTGTTTGTTCAAACACAGTCAGT
Band lengths:
135-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]