MmuEX0019242 @ mm9
Exon Skipping
Gene
ENSMUSG00000026841 | Fibcd1
Description
fibrinogen C domain containing 1 [Source:MGI Symbol;Acc:MGI:2138953]
Coordinates
chr2:31676992-31701525:-
Coord C1 exon
chr2:31701231-31701525
Coord A exon
chr2:31689303-31689439
Coord C2 exon
chr2:31676992-31677088
Length
137 bp
Sequences
Splice sites
3' ss Seq
GATGTGGCTCCTTGTCACAGGCT
3' ss Score
6.64
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCGGGACGCGGGGACGGCGCGGCGCGGGCGGCTCTCGGAGGCTCGCGCCCGCGCTCCCAGCAATCACACGCGCTCACACGCAGCCTAGCTGGCGGCCGCCGCTCCCGGGCCACCCCGGATCCCCGGCACCGAGGGGACCTCCTGCGAGTGCAACGCACCCTGTGCACCCCTCGCCTCCTTTGCACTCGCCCTTGCCCCGCAACCCCGCTGGTCTTGCTGGAAGATGGTCCACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAG
Seq A exon
GCTCTCGGCCGCGGGACTGCCTGGATGTTCTCCTGAGTGGACAGCAGGATGATGGTGTCTACTCTATCTTCCCCACTCACTACCCAGCTGGCTTCCAGGTCTACTGTGACATGCGCACTGATGGTGGAGGCTGGACG
Seq C2 exon
GTATTTCAGCGCCGGGAAGATGGCTCTGTGAACTTTTTCCGAGGTTGGGAGGCGTACCGGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026841_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.458 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACACGCGCTCACACG
R:
ATCTTCCCGGCGCTGAAATAC
Band lengths:
255-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types