BtaEX6046816 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101173853-101185796:-
Coord C1 exon
chr11:101185637-101185796
Coord A exon
chr11:101185089-101185225
Coord C2 exon
chr11:101173853-101173949
Length
137 bp
Sequences
Splice sites
3' ss Seq
GACGGCCTTCCCTGTCTCAGGCT
3' ss Score
7.92
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTTCTCTCTGAGAGCCAAGGCCACATGGCTCACCTGGTGAACTCGGTCAGCGATGTCCTGGACGCCCTGCAGAGGGACCGGGGGCTGGCCCGACCCCACGTCAAGGCTGACCTTCAGAGGGCACCTGCCAGGGGATCACGGCCCCGCGGCTGCGCCAACG
Seq A exon
GCTCTCGGCCACGTGACTGTCTGGACGTCCTCCTGAGCGGACAGCAGGAGGACGGCGTTTACTCCGTCTTCCCCACACACGACCCCGCCGGCTTCCAGGTCTACTGCGACATGCGCACAGATGGAGGCGGCTGGACA
Seq C2 exon
GTGTTTCAGCGACGGGAGGACGGCTCCGTGAACTTCTTCCGAGGCTGGGAGGCATACCGTGATGGCTTCGGCAAGCTCACGGGGGAGCACTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PD(25.2=48.1)
A:
PF0014713=Fibrinogen_C=PU(19.8=93.5)
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTCTGAGAGCCAAGGCC
R:
CCCGTGAGCTTGCCGAAG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]