HsaEX6063542 @ hg38
Exon Skipping
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr9:130911792-130924396:-
Coord C1 exon
chr9:130924237-130924396
Coord A exon
chr9:130923744-130923880
Coord C2 exon
chr9:130911792-130911888
Length
137 bp
Sequences
Splice sites
3' ss Seq
GACAGCCTTGCCTCCCTCAGGCT
3' ss Score
6.68
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTTCTCTCTGAGAGCCAGGGCCACATGGCTCACCTGGTGAACTCCGTCAGCGACATCCTGGATGCCCTGCAGAGGGACCGGGGGCTGGGCCGGCCCCGCAACAAGGCCGACCTTCAGAGAGCGCCTGCCCGGGGAACCCGGCCCCGGGGCTGTGCCACTG
Seq A exon
GCTCCCGGCCCCGAGACTGTCTGGACGTCCTCCTAAGCGGACAGCAGGACGATGGCGTCTACTCTGTCTTTCCCACCCACTACCCGGCCGGCTTCCAGGTGTACTGTGACATGCGCACGGACGGCGGCGGCTGGACG
Seq C2 exon
GTGTTTCAGCGCCGGGAGGACGGCTCCGTGAACTTCTTCCGGGGCTGGGATGCGTACCGAGACGGCTTTGGCAGGCTCACCGGGGAGCACTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.004 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTCTGAGAGCCAGGGC
R:
CCGGTGAGCCTGCCAAAG
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains