DreEX0032818 @ danRer10
Exon Skipping
Gene
ENSDARG00000060393 | fibcd1
Description
fibrinogen C domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070424-245]
Coordinates
chr5:33498702-33532405:-
Coord C1 exon
chr5:33532246-33532405
Coord A exon
chr5:33528695-33528831
Coord C2 exon
chr5:33498702-33498798
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTGTTTTTTCAAGGCT
3' ss Score
9.07
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTGTTATCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGTGATGCTCTGAACGCCATGCAGAAAGAAACAGGAGGCTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTGCGCCTTAAAGGATGTGCTAATG
Seq A exon
GCTCTCGTCCGCGAGACTGCAGTGATATATATGCTAGTGGTCAGAGGGAAGATGGCATCTACTCTGTTTTTCCCACTCATTACCCTGCCGGCTTTCAGGTCTACTGTGATATGAGCACAGATGGAGGTGGCTGGACG
Seq C2 exon
GTGATTCAGCGGAGAGAAGATGGGTCTGTGAACTTCTTCAGGGAGTGGGACTCCTATAGGGAAGGATTTGGCAAAATCACTGGAGAATACTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060393_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=PU(20.0=93.5)
C2:
PF0014713=Fibrinogen_C=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGCCAGATTAACATGGT
R:
GCCAGTATTCTCCAGTGATTTTGC
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]