MmuEX0019241 @ mm9
Exon Skipping
Gene
ENSMUSG00000026841 | Fibcd1
Description
fibrinogen C domain containing 1 [Source:MGI Symbol;Acc:MGI:2138953]
Coordinates
chr2:31676992-31701525:-
Coord C1 exon
chr2:31701231-31701525
Coord A exon
chr2:31689809-31689968
Coord C2 exon
chr2:31676992-31677088
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTGTTCCATCCATAGCTT
3' ss Score
9.74
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCGGGACGCGGGGACGGCGCGGCGCGGGCGGCTCTCGGAGGCTCGCGCCCGCGCTCCCAGCAATCACACGCGCTCACACGCAGCCTAGCTGGCGGCCGCCGCTCCCGGGCCACCCCGGATCCCCGGCACCGAGGGGACCTCCTGCGAGTGCAACGCACCCTGTGCACCCCTCGCCTCCTTTGCACTCGCCCTTGCCCCGCAACCCCGCTGGTCTTGCTGGAAGATGGTCCACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAG
Seq A exon
CTTCTCTCTGAGAGTCAAGGTCACATGGCTCACCTGGTGAACTCAGTCAGTGATGTCCTGGAGGCTCTGCAGAGGGAGCGGGGCCTAGGCCGGCCCCGTGTCAAGGCTGACCTTCAGAGGGCCCCTTCCCGGGGAGCCCGGCCCCGAGGCTGTGCTAATG
Seq C2 exon
GTATTTCAGCGCCGGGAAGATGGCTCTGTGAACTTTTTCCGAGGTTGGGAGGCGTACCGGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026841_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.458 A=0.389 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PD(38.0=55.6)
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACACGCGCTCACACG
R:
ATCTTCCCGGCGCTGAAATAC
Band lengths:
255-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types