GgaEX1025097 @ galGal3
Exon Skipping
Gene
ENSGALG00000003866 | FIBCD1
Description
NA
Coordinates
chr17:6664427-6666641:-
Coord C1 exon
chr17:6666165-6666641
Coord A exon
chr17:6665238-6665397
Coord C2 exon
chr17:6664427-6664563
Length
160 bp
Sequences
Splice sites
3' ss Seq
CACGTGTCCCCCACCTGCAGCTC
3' ss Score
10.2
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGATGAGCTGTGGCTACGTGCTGTGCACCGTCCTGCTCTCGGTGGCCGTCCTCTTGGCGGTGACAGTGACAGGGGCCATCCTCTTCATGAACCACTACCACACGCCCGTCACCGAGCCGCCCCCCGTCATCAGCACCAACCCCGAGGAGGCCAACGCGTTGGTGACCATCGAGAAAGCCGACAGCTCCCGCATCAACATCTTCATCGACCCCAACTGCCCCGACCCAGCGGGCAACGTCGGGCGCCTGGAGGGGCTGCAGGGCTCCCTGCTGCGCGCCCTCGCCGAGCACGACGCTGAGGCCAAGGCCACCAAGGGCCAGCAGAAAGCTCTGCTGCTTGGTGTGGCCGACGAGGTGGCCAAGCTGGTGACGCACGCCGCGCAACTGCGAGCTGACTGCGATGGCCTCAAGAAGGGGCACAGCGCTATGGGGCAGGAGCTCAGCGCCCTGCAGAGCGAGCAGGGCAGGCTCATCCAG
Seq A exon
CTCCTCTCAGAGAGCCAAACCAACATGGCCCGGCTGGTGAGCTCGGTCAGCGATGTGCTGGACACACTGCAGAAGGAGCGCGGCGGCGTCCGGCCCCGGCTCAAAGCTGACCTGCAGCGAGCCCCGGCACGGGGAGCACGGCCCCGTGGCTGCTCCAATG
Seq C2 exon
GCTCCCGGCCCCGGGACTGCTTTGACATCTATGCGAGCGGACAGCAAGAGGATGGGATTTACTCCATCTTCCCCACACATTACCCCTCAGGCTTCCAGGTCTACTGTGACATGACGACCGATGGGGGCGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.426 C2=0.000
Domain overlap (PFAM):
C1:
PF029949=Transposase_22=PU(60.7=40.9),PF104734=CENP-F_leu_zip=PU(61.6=38.4)
A:
PF029949=Transposase_22=PD(37.4=74.1),PF104734=CENP-F_leu_zip=PD(36.4=66.7)
C2:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGGGCCAGCAGAAAG
R:
TGAGGGGTAATGTGTGGGGAA
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]