GgaEX1025097 @ galGal4
Exon Skipping
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6048574-6050790:-
Coord C1 exon
chr17:6050314-6050790
Coord A exon
chr17:6049387-6049546
Coord C2 exon
chr17:6048574-6048710
Length
160 bp
Sequences
Splice sites
3' ss Seq
CACGTGTCCCCCACCTGCAGCTC
3' ss Score
10.2
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGATGAGCTGTGGCTACGTGCTGTGCACCGTCCTGCTCTCGGTGGCCGTCCTCTTGGCGGTGACAGTGACAGGGGCCATCCTCTTCATGAACCACTACCACACGCCCGTCACCGAGCCGCCCCCCGTCATCAGCACCAACCCCGAGGAGGCCAACGCGTTGGTGACCATCGAGAAAGCCGACAGCTCCCGCATCAACATCTTCATCGACCCCAACTGCCCCGACCCAGCGGGCAACGTCGGGCGCCTGGAGGGGCTGCAGGGCTCCCTGCTGCGCGCCCTCGCCGAGCACGACGCTGAGGCCAAGGCCACCAAGGGCCAGCAGAAAGCTCTGCTGCTTGGTGTGGCCGACGAGGTGGCCAAGCTGGTGACGCACGCCGCGCAACTGCGAGCTGACTGCGATGGCCTCAAGAAGGGGCACAGCGCTATGGGGCAGGAGCTCAGCGCCCTGCAGAGCGAGCAGGGCAGGCTCATCCAG
Seq A exon
CTCCTCTCAGAGAGCCAAACCAACATGGCCCGGCTGGTGAGCTCGGTCAGCGATGTGCTGGACACACTGCAGAAGGAGCGCGGCGGCGTCCGGCCCCGGCTCAAAGCTGACCTGCAGCGAGCCCCGGCACGGGGAGCACGGCCCCGTGGCTGCTCCAATG
Seq C2 exon
GCTCCCGGCCCCGGGACTGCTTTGACATCTATGCGAGCGGACAGCAAGAGGATGGGATTTACTCCATCTTCCCCACACATTACCCCTCAGGCTTCCAGGTCTACTGTGACATGACGACCGATGGGGGCGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.426 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0014713=Fibrinogen_C=PU(19.7=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGGGCCAGCAGAAAG
R:
TGAGGGGTAATGTGTGGGGAA
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]