DreEX0032816 @ danRer10
Exon Skipping
Gene
ENSDARG00000060393 | fibcd1
Description
fibrinogen C domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070424-245]
Coordinates
chr5:33528695-33542919:-
Coord C1 exon
chr5:33542440-33542919
Coord A exon
chr5:33532246-33532405
Coord C2 exon
chr5:33528695-33528831
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTGTGTATTTCAGCTG
3' ss Score
11.32
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
AGGATGAGTTGTAGCTATCTGCTATGTACCATCTTGCTCTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACAGGAACCATTCTTCTTATGAACCACTACCAGGCTCCCCCTATGTCGGACGGCCCGCCCCATATTAGCACCAATCAGGACGAAGCCAATGCACTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGTCCTGATTATAACAGTAACTTCCTGCGGCTGGAAGGTGTGCAGACGTCTTTGCTGCACTCGCTCACTGACCACGATACGGATCTCAAGTCTGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCTCATGCGGGGCAGCTGAAGATGGACTATGAATCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGACCTGAATACACTGCAGACTGAACAAAGCAGACTTATACAG
Seq A exon
CTGTTATCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGTGATGCTCTGAACGCCATGCAGAAAGAAACAGGAGGCTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTGCGCCTTAAAGGATGTGCTAATG
Seq C2 exon
GCTCTCGTCCGCGAGACTGCAGTGATATATATGCTAGTGGTCAGAGGGAAGATGGCATCTACTCTGTTTTTCCCACTCATTACCCTGCCGGCTTTCAGGTCTACTGTGATATGAGCACAGATGGAGGTGGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060393-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.019 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0014713=Fibrinogen_C=PU(20.0=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGTGTGCAGACGTCTTT
R:
ATATCACTGCAGTCTCGCGGA
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]