MmuEX0050715 @ mm9
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58616086-58630425:+
Coord C1 exon
chr2:58616086-58616203
Coord A exon
chr2:58626527-58626641
Coord C2 exon
chr2:58630216-58630425
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCACTCTCTCAACAGCAC
3' ss Score
10.54
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
AAAACGGTCTGTGTATGTTAAGAATCCATACCTGGAAGGCATGGACGAAGACATTCTCTATCACTTGGATTTAGGAACCAAAACACACAACCTACCAGCAATGTTTGGGGATGTAAAG
Seq A exon
CACGGGATGGGCATCCCCTCCATTTCCATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACACTGCTGTGATGTTACCATCATCAGAATTGGAACGTCAGGGGGAATTG
Seq C2 exon
GGATTGCACCAGGCTCCGTTGTAATAACAGATACAGCTGTAGACTCCTTCTTCAAGCCTCGATTTGAGCAGGTCATCTTGGATAACGTGGTCACCCGAAGCACTGAGCTTGACAAAGAACTGGCTAATGATCTGTTCAACTGTAGCAGAGAAATCCCCAATGTTCCAACCCTCATCGGACACACGATGTGTACCTATGACTTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCATGGACGAAGACAT
R:
GAGGGTTGGAACATTGGGGAT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: