GgaEX6043364 @ galGal3
Exon Skipping
Gene
ENSGALG00000012554 | UPP2
Description
NA
Coordinates
chr7:37940529-37942678:+
Coord C1 exon
chr7:37940529-37940687
Coord A exon
chr7:37941867-37941981
Coord C2 exon
chr7:37942469-37942678
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCTTCTCTCAACAGCAC
3' ss Score
10.3
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TTCGTCTGCGTTGGCGGCAGCCCGAACAGGATGAGGTCATTTGCGCAGTTCATGCACAAGGAGCTGGGGCTGGAGGGCGATGGGGAGGACCTGGCCGACATCTGCGCGGGGACGGACCGCTACGCCATGTACCGCGTGGGACCGGTGCTCTCCATCAGC
Seq A exon
CACGGAATGGGCATCCCTTCTGTGTCCATCATGCTTCACGAGCTGATCAAACTGCTGCACCACGCCAAATGCCGAGACGTCACCATTATACGCATTGGTACTTCTGGAGGCTTAG
Seq C2 exon
GGGTGCAGGCCGGCTCCGTGGTGATCACAGACAGGGCGGTGGACGCCCGCTTCCAGCCACGGTTCGAGCAGGTGGTGCTGGGCGATGTGGTGGTGCGGGGCACCGACCTGGACGGGGGCCTTGTGGAGGAGCTGCTGGCTTGCAGTGAGGCCATTCCTGACTTCCCCACTCTCGTCGGGCACACCATGTGCACCTACGACTTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012554-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCTGGCCGACATCT
R:
CGAGAGTGGGGAAGTCAGGAA
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]