RnoEX6016928 @ rn6
Exon Skipping
Gene
ENSRNOG00000005341 | Upp2
Description
uridine phosphorylase 2 [Source:RGD Symbol;Acc:1308188]
Coordinates
chr3:44823073-44830902:+
Coord C1 exon
chr3:44823073-44823231
Coord A exon
chr3:44826662-44826776
Coord C2 exon
chr3:44830693-44830902
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCTCTCTCTCCGCAGCAC
3' ss Score
12.88
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TTTGTCTGCGTTGGTGGGAGCTCGAACAGAATGAAAGCGTTTGCACTGTTTATGCACAAGGAACTCGGGTTGGAGGGAGATGGAGACGACATCGAGGACATCTGTGCGGGGACAGACAGATACTGCATGTTCAAAACAGGCCCTGTGCTCTCCCTCAGT
Seq A exon
CACGGGATGGGCATCCCCTCCATTTCCATTATGCTCCACGAACTCATCAAATTACTCCACCATGCACGCTGCTGCGATGTTACCATCATCAGAATTGGAACATCGGGGGGAATTG
Seq C2 exon
GGATTGCTCCGGGGTCTGTTGTAATAACAGATACAGCTGTAGACTCCTTCTTCAAGCCTCGGTTTGAACAGGTCATCTTGGATAACGTGGTCACCCGAAGCACCGAGCTTGACAAAGAACTGGCTACTGATTTGTTCAACTGTAGCAGAGAGATCCCCAACTTTCTAACCCTCATCGGACACACGATGTGTACCTATGACTTTTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005341-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.9=100)
A:
PF0104815=PNP_UDP_1=FE(15.3=100)
C2:
PF0104815=PNP_UDP_1=FE(28.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGAGGACATCTGTGCG
R:
TCGTGTGTCCGATGAGGGTTA
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]