DreEX6035661 @ danRer10
Exon Skipping
Gene
ENSDARG00000036833 | upp2
Description
uridine phosphorylase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-830]
Coordinates
chr9:16169960-16171037:-
Coord C1 exon
chr9:16170879-16171037
Coord A exon
chr9:16170345-16170459
Coord C2 exon
chr9:16169960-16170169
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTGGTATGTATTTCTGATAGCAT
3' ss Score
4.62
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
TTTGTTTGTGTTGGTGGAAGTCCCAATAGAATGAGAACTTTTGCTGAATATATACATGAGCAGCTGGAGATGCCCAGTAACACAGCAGACATTAAAGATATCTGTGAAGGAACAGACAGATACTCGATGTATAAAGTGGGACCTGTGCTTTCCATAAGT
Seq A exon
CATGGCATGGGTGTTCCCTCCATCTCCATCATGCTGCATGAGCTCATTAAATTGCTCTATCATGCTCGCTGTCGTGATGTCATCATCTTTCGCATTGGCACATCAGGTGGAATTG
Seq C2 exon
GCTTGGCTGCAGGTACAATAGTGATCACAGATAAAGCTGTGGACTCATTCTTCAGGCCACAGTTTGAGCAGGTGGTTTTGGGAAAGGTAATCACCAGGAGCACAGAGCTTGATGTGGATATAGCCCAAGAACTACTGCAGTATTCATCTGAGCTTACAGATATGCCCACTGTAATTGCAAACACAATGTGCACGCATGATTTCTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036833-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGTTGGTGGAAGTCCCA
R:
CCTTTCCCAAAACCACCTGCT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]