BtaEX6009683 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012801 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:38342022-38352922:-
Coord C1 exon
chr2:38352764-38352922
Coord A exon
chr2:38349496-38349610
Coord C2 exon
chr2:38342022-38342231
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTTTCTCTCCACAGCAT
3' ss Score
12.93
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTTGTCTGTGTTGGTGGAAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTTAGATTGACGGACAGTGAAGAGGACATCAAGGATATCTGTGCTGGGACAGACAGCTATTGTATGTACAAAATTGGTCCCGTGCTCTCCATCAGT
Seq A exon
CATGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATTAAATTACTATACCATGCCCGATGCTCTGACGTTATCATTATCAGAATCGGCACATCAGGGGGAATAG
Seq C2 exon
GGATTGCACCTGGATCTGTTGTAATAACAGATGAAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTAATCTTGGACAACATTGTCACCAGAAGTACTGAACTTGACAAAGAACTGGCTGAGGAAATATTCAACTGTAGCAAAGAAATTTCCAACTTCCCAACCCTCATTGGACATACGATGTGTACTTATGATTTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012801-'2-9,'2-5,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTTTATGCACAAGGAGC
R:
TCCTCAGCCAGTTCTTTGTCA
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]