HsaEX6016116 @ hg19
Exon Skipping
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:23061]
Coordinates
chr2:158971613-158978130:+
Coord C1 exon
chr2:158971613-158971771
Coord A exon
chr2:158974336-158974450
Coord C2 exon
chr2:158977921-158978130
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTCTCTCAATAGCAC
3' ss Score
10.96
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTTGTCTGTGTCGGTGGGAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTCGGGTTTGAGGAAGCTGAAGAAGACATAAAAGACATCTGTGCTGGGACAGACAGATACTGTATGTACAAAACCGGGCCTGTGCTCGCCATCAGT
Seq A exon
CACGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCATTATTAGAATCGGTACATCAGGGGGAATAG
Seq C2 exon
GGATTGCACCAGGGACTGTTGTAATAACGGATATAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTCATTTTGGACAACATTGTCACCCGAAGTACTGAACTGGACAAAGAACTGTCTGAAGAACTGTTCAACTGTAGCAAAGAAATCCCCAACTTCCCAACCCTCGTTGGACATACAATGTGTACCTATGATTTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCCCAACAGAATGAAA
R:
TGTCCAGTTCAGTACTTCGGGT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)