HsaEX6016116 @ hg38
Exon Skipping
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:158115101-158121618:+
Coord C1 exon
chr2:158115101-158115259
Coord A exon
chr2:158117824-158117938
Coord C2 exon
chr2:158121409-158121618
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTCTCTCAATAGCAC
3' ss Score
10.96
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTTGTCTGTGTCGGTGGGAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTCGGGTTTGAGGAAGCTGAAGAAGACATAAAAGACATCTGTGCTGGGACAGACAGATACTGTATGTACAAAACCGGGCCTGTGCTCGCCATCAGT
Seq A exon
CACGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCATTATTAGAATCGGTACATCAGGGGGAATAG
Seq C2 exon
GGATTGCACCAGGGACTGTTGTAATAACGGATATAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTCATTTTGGACAACATTGTCACCCGAAGTACTGAACTGGACAAAGAACTGTCTGAAGAACTGTTCAACTGTAGCAAAGAAATCCCCAACTTCCCAACCCTCGTTGGACATACAATGTGTACCTATGATTTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-'21-23,'21-22,23-23=AN
Average complexity
A_C2
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
PF0104815=PNP_UDP_1=FE(15.1=100)
C2:
PF0104815=PNP_UDP_1=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCCCAACAGAATGAAA
R:
TGTCCAGTTCAGTACTTCGGGT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains