MmuEX0025972 @ mm9
Exon Skipping
Gene
ENSMUSG00000026866 | Kynu
Description
kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
Coordinates
chr2:43459662-43487139:+
Coord C1 exon
chr2:43459662-43459808
Coord A exon
chr2:43484473-43484571
Coord C2 exon
chr2:43487066-43487139
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTGAATGTTCTTCCCCAGGGC
3' ss Score
9.51
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGGGAAGAGACCTTAAGGATGGAGGACATACTGGAAGTAATCGAGGAGGAAGGAGACTCGATCGCCGTGATCCTGTTCAGTGGGCTGCACTTTTATACTGGACAGCTGTTCAACATTCCTGCCATAACAAAAGCTGGACATGCAAAG
Seq A exon
GGCTGTTTTGTTGGCTTTGACCTAGCACATGCAGTTGGAAATGTTGAACTCCGCTTACATGACTGGGGTGTTGACTTTGCCTGCTGGTGTTCCTATAAG
Seq C2 exon
TATTTAAATTCAGGAGCTGGAGGTCTGGCTGGTGCCTTTGTCCACGAGAAACATGCTCATACTGTCAAGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026866_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.3=100)
A:
PF0026614=Aminotran_5=FE(13.4=100)
C2:
PF0026614=Aminotran_5=FE(10.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAAGGAGACTCGATCG
R:
GCAGGCTTGACAGTATGAGCA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: