DreEX0042323 @ danRer10
Exon Skipping
Gene
ENSDARG00000099546 | kynu
Description
kynureninase [Source:ZFIN;Acc:ZDB-GENE-120215-204]
Coordinates
chr6:595393-596531:+
Coord C1 exon
chr6:595393-595539
Coord A exon
chr6:596220-596318
Coord C2 exon
chr6:596458-596531
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTGTGTGTGCTCAGGGG
3' ss Score
8.32
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCGAAGACGTGATCAGGACGGAGGACATTGTTTCTCTAATCGAGCGGGAGGGAGAATCCATCGCTCTGGTCATGCTCAGCGGCGTACAGTATTACAGCGGTCAACTCTTCGACATGGAGACCATCACCACAGCGGGACACAGCAAG
Seq A exon
GGGTGTTTTGTAGGGTTTGATTGTGCGCACGCTGTAGGGAACGCAGAGCTGCGACTTCACGACTGGAATGTGGATTTTGCATGCTGGTGCACTTATAAG
Seq C2 exon
TATATGAACTCGGGGGCCGGTGGACTGGCTGGTGCATATATACACGAGAGACACGCTCATAGTATTAAACCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099546-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.6=100)
A:
PF0026614=Aminotran_5=FE(9.8=100)
C2:
PF0026614=Aminotran_5=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATCGAGCGGGAGGGAGAA
R:
ACTATGAGCGTGTCTCTCGTGT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]