RnoEX0047955 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28474623-28556218:+
Coord C1 exon
chr3:28474623-28474769
Coord A exon
chr3:28507045-28507143
Coord C2 exon
chr3:28556166-28556218
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTGTATGTTCTTCCCAAGGGC
3' ss Score
7.6
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GGGGAAGAGACCTTAAGAATGGAGGACATACTGGAAGTAATTGAGAAGGAAGGAGACTCAATTGCTGTGGTCCTGTTCAGTGGCCTGCACTTTTATACTGGACAGCTGTTCAACATTCCTGCCATTACACAAGCCGGACATGCAAAG
Seq A exon
GGCTGTTTTGTTGGCTTTGACCTAGCGCATGCGGTTGGAAATGTTGAACTCCACTTACATGACTGGGATGTTGACTTTGCCTGCTGGTGCTCCTACAAG
Seq C2 exon
GTTAGTGGGATGGTTCGGCCATGAACTCAGTACAAGATTTAACATGGATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993_MULTIEX1-3/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.2=100)
A:
PF0026614=Aminotran_5=FE(10.9=100)
C2:
PF0026614=Aminotran_5=FE(5.3=100)
Main Skipping Isoform:
ENSRNOT00000043533fB7514
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGAGACCTTAAGAATGGA
R:
TACTGAGTTCATGGCCGAACC
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]