BtaEX6009956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53883387-53910187:-
Coord C1 exon
chr2:53910041-53910187
Coord A exon
chr2:53884346-53884444
Coord C2 exon
chr2:53883387-53883460
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTATCGTGTTCTTCCCCAGGGT
3' ss Score
9.83
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGGGAAGACACATTGAGATTAGAGGATATCCTTGAAGTAATTGAGAATGAAGGTGACTCTATTGCAGTGATCCTTTTCAGTGGTCTGCATTTTTATACCGGACAGCTCTTTAATATACCTGCCATCACAAAAGCAGGACAAGCAAAG
Seq A exon
GGTTGTTTTGTTGGCTTTGATCTAGCACATGCAGTTGGAAATGTTGAACTTCACTTACATGACTGGGGAGTTGATTTTGCCTGCTGGTGCTCCTACAAG
Seq C2 exon
TATTTAAATACAGGAGCAGGAGGTCTTGCTGGTGCCTTTGTCCATGAAAAACATGCCTATACAATTAAACCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277-'9-13,'9-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.4=100)
A:
PF0026614=Aminotran_5=FE(9.6=100)
C2:
PF0026614=Aminotran_5=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGACACATTGAGATTAGAGG
R:
GCAAGACCTCCTGCTCCTGTA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]