GgaEX1032725 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34286861-34294978:+
Coord C1 exon
chr7:34286861-34287007
Coord A exon
chr7:34294064-34294162
Coord C2 exon
chr7:34294905-34294978
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTAAATATCTTTCCTGCAGGGT
3' ss Score
9.23
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
Seq A exon
GGTTGCTTTGTTGGATTTGACCTGGCTCATGCTGTTGGGAACGTAGAGCTCTGTTTGCATGACTGGGGAGTGGATTTTGCATGCTGGTGCACCTACAAG
Seq C2 exon
TATTTAAATTCTGGAGCAGGAGGCCTCGCTGCTGCATACATTCACGAGAAGCATTCCCAGAGTATTCAACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.5=100)
A:
PF0026614=Aminotran_5=FE(19.0=100)
C2:
PF0026614=Aminotran_5=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGAGACCTTGAGGATT
R:
AGGCCTCCTGCTCCAGAATTT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]