MmuINT0062061 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30219855-30223307:+
Coord C1 exon
chr2:30219855-30220095
Coord A exon
chr2:30220096-30223071
Coord C2 exon
chr2:30223072-30223307
Length
2976 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTCGGTCATCTGTCTGTCAGCTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GATCAGCAGGGCTAGAAGCGAGGCTTGCGGAGCATGGAACCCGGCCCACGCCGGGGTCTGCGATCCAGCCAGCCCGCGAAGGTGTCCAAGGTGGGATGAGTGGATCCCCTGGACCAGGCGGCTCGAGAGGATGCGTGGCTCCGTGGGTGGAACGAGAAAGGAGCTGGGTCAGAGAGGAGACTCCCGGGCCTGGAACGCTGCGAGCATCTAAAAGTATGGTCGCGGGCACCTCCCCCCCCAG
Seq A exon
GTGTGCCGGCTGTGGGCAGCGCTGTATGTGGACAGCGGTCAAGGATGTCCTAGGGAGGTCGGGGCCAAAGCAGGAAGGTCCCTGCCCAGGCTCCGCAAGGAGCAGATACTGAAGCTTGGAATATTGTTGATGTTCACTGTGGGGTTGCCCAATGCCCGGCTGCGTGGGATCCCACAGAGATGTGCAGGGGTGGGACAAACAGGACATGAGGCAGAGTGAGCTGTAGTACTGCCTGGTTCTGATAACACAGCCAGGTCAAAGTGGGACGAGAGAATGCTCAGGCCAATTAGTAGGGTTGGCTTGCACAAAAGAGGAGGGCCTGGATTGGAAAGCCGGGATATCAGGCCTAAGGTGCCAGGGTGGAGGAGCAGATAACCTACCTGCTCAAGAATGTGGAGCAGGATTGGTGGCCAGCATTAGAATAGAGAGACAGGTAGGATATGATGATGAGCTTGGACCCTTCCTTCCTCTTGGGCACAGACAAGGCTAACTGGACTCACCTGCAAACAGATGCCAGGCCTCCCCTTCCCTCTCTCCTCCTGCCTGGATCCTAGAATAGGCTCACCTCTAATACCAGGTGGCCTTCCCAGACGTTCAAGGCCCTCAGGTTTGATACAAGCAAGCAGCAGGCAATGGCTAGGGTGCTCGGCCCAGCCTCGGTCCTCATCTCTCAAAGCCTCAGTATTCCTATCCTTGCGTGCTCTGAGAAGGACTCCACTGAGGCCTCACAGAGAGCTAGTGCGCTGGCTTGTTGAAATGCTCTGAGAAGTATATCTCCTGCTATTTGATGTCCTTGTCTCTCACTCAGTGCCCTGCCAGGCTGGAGGCACATCATAGCCCACTTAACCTCTAGGCAAAAATGTACCCTGCCCTTGACAGTGTGGCAATTTCTTTAGCCCTTGAACCTCACTCTGCCTGCCAGCCCTCTTGCCCTCTCCCCTCCCCCCACAGCCCTAGGGCCAGCCTGATAGGGCTGTATGCCTTCCCCCACTCACCAAGGATAATCTGTTCCTTGTTCATGTCTTGTGCTGGCCTAGTGACTTTTGGTCATCATCCCAGAGAGACAGGGTCTGTCCTGGCCTATGGTGTTCCTTCCTCTGAAGATCTCAGAAAGCATCCTTGAACTTGAACAAGACCCCTGCTGCAGGGTCTTGGGGTCTCAGAATATGTGATCAAACATCTCATCTGGCTTTGGGTCTTAGTGGGTCTTGGGCTATCTTTTCTCTCTGTGTCTCTGCTGGGGTGCACTGCCTGTTCCTGCTGTGTTAAGCAGAACCCAGAGTCCAGTAGACCTTGACATACCCTCTCTTCACCACTTAGCAACCGATGAGTTATTTTGGACTCCTGGCTTAGGTTGGACAAAACTCAGTTTCTTCATGAGAAGGTGGGGAGAGTCAGGGAGAAACATCTGCCCATATAGCTGTCATGACTCAGTTGGTTCATAGCAGGAAACACAACACTTGGGGGACAAAAAGTAAGAGAAGTATCTAGAATTCAGATCCAGCCTGTGCTACAGTATATGACTCTGTCTCAAAAATAAATATAAGTCAAAACAAAACAAACAACAAAACCCCCACCACCACAACAAGATCAGCACAAATATTTAGGCCACAGGAAGTGAAGCATTCCTGGCTCTGAAAAGGATGTCAGTCTGCAGCCTGAGATCTTTATTTAGAAGATGGCCAGTGTTTTTAGAAAGACTGAGAAAGTGCAGAAGGCCCTGAGTTAGGGGATGACCTATTTATCTCCCGGTCTCAGGGTTCTTTCTATGCCAACATGCCACGCATGTCTCCCTCTGCTGCCGGGCTTATAGAGGTGTCTGTGGGGTATCTGGCTGCTTGCCTGCCTGTGGGGGCAGAGGGCTGGGGCCTGGTGTTCCTGATGCACGCCTGCTGTTCATTCAGCCACTGGAGGCACTATTTTTTTCCCCCACTGCTTCACGCTAGACAAGTGCTTTAAAAAATTTTGAGACAGGGTCTGCCCAAGTTGCCCAGTCATTCTTTGAGCTTTTGATCCTCCTGCCTCAGCTGGAATCACAAGCCTGAAGTGCCCAACCTCTGGGGCCTCTCTTGTTTATATCTCTGTGTGCTGACATGTGCACCTTTCTGTAAAAAACAAAACAAACAAACAAACAAACAAAACATCCCATAGATGAGCGTTTTGCATGTGTATATGTCTGTGCACCATGAGTGCCTGGTGCCTTCACAGGTCAGAAGAGGGCAGAGGGCATCAGGTCCCCTTCAGCTGGAGTTGTGACAGTTGTGAGCTAGCATTTGGGTGCTGGGAATTGAATCTGGGCCTTCTAGAAGGATAGCTAATGTTTTTAACTTGCTGAGCCAACTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCACACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGTATTAAAGGTGTGAGCCACCATGCCTGGCTTCTGGTTTCATTTCTGTTGCTGTGATAAAACACCCCAGCAAAAGCAATTTAGGGGAGGAATGCTTTGTTTTGCCTCACAGTCCCAGGTGATAGTCCATCATTGTGAGAAAGTCACAATGACAGGATCTCATGACAGCTGTCCATGTTACATTCAGTTAAGAGGCAGAGAGCAAAGAATGTGTGTATGCTTTTACACAGTACATGGCCCTAGCCTAGGGAATGGTGCCACCTACTGTGGATGGGTCTTCTCACCTTTACTAACGTAGTTCATTCTTCGTGGACATGCTCAGAGATCCATCACATTCAACCTTGGATCCTGGGGAGCTCGGTTGTCAGGCTTGCTCAGCAGGTTCTTTTATTTGCTTAGCTATCTCACTGCCCCCAAGCTTGTTGGCAGAACTGGGTATTGGACATAGGGAGGTGAGCGCTCTACCACTCATGCCCTGTATGCACCTTCTGTGTCTCACTCGGTCATCTGTCTGTCAG
Seq C2 exon
CTTTGTGGAAGGACCTGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTACCCAGGACCCAGCCAGAGACCAGCTGAAGACATTCTCCTTGCAAGCTCTCACCCCAGGAGGTCCCGTCTCGGGTGGTGGACCTACCATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAGTGTTCCTGTACACAACTTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: