MmuALTD0005327-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30219725-30223307:+
Coord C1 exon
chr2:30219725-30219825
Coord A exon
chr2:30219826-30220067
Coord C2 exon
chr2:30223072-30223307
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGG
5' ss Score
3.77
3' ss Seq
CTCGGTCATCTGTCTGTCAGCTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TTGGCCGGCCCGAGGCCACGCCTTCCCCATCCAGCGGCGTGGTTTGGTTGTATTGCCGCCTGGAAAGGAGACGCTGCCCTTCCCCAGCGATGGGATCCCTG
Seq A exon
GTGAGTGACGGCCACTGCGCGGGCGACCAGATCAGCAGGGCTAGAAGCGAGGCTTGCGGAGCATGGAACCCGGCCCACGCCGGGGTCTGCGATCCAGCCAGCCCGCGAAGGTGTCCAAGGTGGGATGAGTGGATCCCCTGGACCAGGCGGCTCGAGAGGATGCGTGGCTCCGTGGGTGGAACGAGAAAGGAGCTGGGTCAGAGAGGAGACTCCCGGGCCTGGAACGCTGCGAGCATCTAAAA
Seq C2 exon
CTTTGTGGAAGGACCTGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTACCCAGGACCCAGCCAGAGACCAGCTGAAGACATTCTCCTTGCAAGCTCTCACCCCAGGAGGTCCCGTCTCGGGTGGTGGACCTACCATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAGTGTTCCTGTACACAACTTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTTGGTTGTATTGCCGC
R:
TGACCAAAAGTTGTGTACAGGAACA
Band lengths:
298-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: