MmuALTD0005327-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30364205-30367787:+
Coord C1 exon
chr2:30364205-30364305
Coord A exon
chr2:30364306-30364547
Coord C2 exon
chr2:30367552-30367787
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGG
5' ss Score
3.77
3' ss Seq
CTCGGTCATCTGTCTGTCAGCTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TTGGCCGGCCCGAGGCCACGCCTTCCCCATCCAGCGGCGTGGTTTGGTTGTATTGCCGCCTGGAAAGGAGACGCTGCCCTTCCCCAGCGATGGGATCCCTG
Seq A exon
GTGAGTGACGGCCACTGCGCGGGCGACCAGATCAGCAGGGCTAGAAGCGAGGCTTGCGGAGCATGGAACCCGGCCCACGCCGGGGTCTGCGATCCAGCCAGCCCGCGAAGGTGTCCAAGGTGGGATGAGTGGATCCCCTGGACCAGGCGGCTCGAGAGGATGCGTGGCTCCGTGGGTGGAACGAGAAAGGAGCTGGGTCAGAGAGGAGACTCCCGGGCCTGGAACGCTGCGAGCATCTAAAA
Seq C2 exon
CTTTGTGGAAGGACCTGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTACCCAGGACCCAGCCAGAGACCAGCTGAAGACATTCTCCTTGCAAGCTCTCACCCCAGGAGGTCCCGTCTCGGGTGGTGGACCTACCATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAGTGTTCCTGTACACAACTTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTTGGTTGTATTGCCGC
R:
TGACCAAAAGTTGTGTACAGGAACA
Band lengths:
298-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types