HsaINT0061431 @ hg19
Intron Retention
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131799253-131802969:+
Coord C1 exon
chr9:131799253-131799295
Coord A exon
chr9:131799296-131802730
Coord C2 exon
chr9:131802731-131802969
Length
3435 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTGGTCATCTGTCTCTTAGCTC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GGAGCAGGCGTGCGGGCCGTGAGCGGCGCCAGAGGGTACCTGG
Seq A exon
GTGAGTTTCAATGATATTCCGGGGTGGGGGCAAGAGAAGAAGGGGCTGCCCAAGATGCCTGGGGTGGAGTGAGCAATTTCTGAAGACGGGGATATTGCTGAGGTCCAACGCGGGGATGCCCGGTGCCCGGCATGGTGGGACTATTGAGGGGTCCGGCATGGGGTGAATAGGAGACTGGGCAGAGTGGCTCAAGGGAGTCGGGGACGTTGTTGGGGTCCAGACGGAATGAGTGAGTGCACAGGCCAGAGTCATTAGTGGGGTGGTCTAGCGCAGGGGAGGAGGCGCGTAGGATGATATGCTTAGGCACCCAGGCTGAGGGTGCTGTAAGTGCTGTGGTGACGGTGGAATGAGGAGGTGTCCGCCTAAGATTGTAGGGCACAAGAGATGGCTGCCCAAGTGGGGCCAGGCCCTACACAGCAGTAGAAGTGTCCATTTGGTAGGGGACCTTGCCGTGGGCTTTTCATTGTGGAGAGGAGGTGGAGGGGTCTCAGCTTAGGCCCTGGAGGACGGACAGGGTGCCAGGGGGACGGACACAGTGTGGGTTGACTGGATTTGGATCCATCCCTGGAGTGAAGCAGGCTTGGGGGCTGGTGATGTTACCTCGCACCTGCAGGCTCTGCCTCCCAGTGGGGACAGCAGGGGCTGCTCTGGACTCTCCCGCAAACAGTGGGCCTCAGTCACCCCTGTAGCGTTTATTTGTTCAGGCTCATCTTTAACACCATGTGGGCTTCTCACTTGGGGGCCCAGAAGTCCTACAGTTGTGGCCTGGAAGGAGCAGTGGCAGTTGTAGCAGGCAGAAGCTGGGAAACCCTGCCACAGCCTTGAGATCCCCCAGAGCTTGGCCGCTTAGTACTCGGTGACCTCAGGCAGGCTGCCTCATCTCAGAGCCTCCGCGTTTCCCCATCCTTGAGATAAACATTGGCCATTGCGAGGGTTCTGAGAGGACTGGACCCAAAGCCTGTCGTGGAGAGCCTGTTCTGGATCTGGCCTGGAATAAGAGCTTGGGAAATAGTAGCTGCTGGCCCTCTGATGTTCTTGTCTTCCCTCTTTCTGAGACCTGAGCCAGCCTGGGGTTGGGGTGAAGGGTAGGGGGACGTGGCTTACAGTATTAACCTAGGTCCTGACCACTGCAGCTCACGTAGCTCAATTCACAGCCTCCTGGGCAGATGTCTCTACCCCTGACAACCTGGAAGCTTCCTTAGCCTGCCCTGCCCTCTCACACACCCCCACCAGCCCTAGAGCGAGACTGACAGGCTCCTCAGTCCTTCCCACTCACTGGGGAGAAGCTGTTTCTTCTGCTGGCCCAGTGACTTTGGCGGCCATCCCAGGGAGACAGGGTCTGTCCTGGCTTGTGTGTTCCTTCCGCTTGAGGTCCCGGGAGACCTTGAAGGCATCCTTGGGCTTGGAGCTGGAAGTGGGGGAGGACCCTGCCGGGTCTTGGGGTCCAGGCTAGGTGTGATCAAGCCACTTATTTCCTGGCCTTGGGAAGGGGCAATGGGGTACCCTGGCAGGGAGGGGAGTATCTCCCAAGGTCCAGGGGAAAGCTGCCCAGTACTCTGTGGTCTGCTGGGGCTTGCTACTTCCTGCTGCATGTCAAATTTAGCAAAAGCATTGTACTGAGCACAAAGTCTGACTCTACCAAGTACCAGCTGTGTGACTTTGGACTCCTGACTTAGCTTGTCTGAGATTCAGTTTCCTCATTGGAAACCAGAGGTGAGGCTGGGGGGAAGGTGGGTGGCATCAACTTCACATAATCCTTTTTTTTTGTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTGTGGCAGAGTCTCGCTCTGTCACCCAGACTGAAGTGCAGTGGCGCGATCTAGGCTCACTGCAACCTCTGCCTCCTGGATTCAGGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACGTGCCACCACACTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGACCAGGCCAGTCTGGAAGTCCTGACTTCAGGTGATCCGCCCGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCCCAGCCAACCTCACAAAATTCTAATGATTCAGTGAGATGATGGATGTAAAGAATGCAGCACAAAATACGTAGCGTGGAGTAGCTCTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATTTTATTTTATTTTTTTGTTTTTTATTTATTTATTTTTTGAGATGGAGTCTCACTCTATTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCCCTGCAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTTCCGCGTAGCTGTGATTACAGGTGCCCGCTACAACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGATCTTGATCTCCTGACCTTGTGATCCTCCCTCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTAAGCCACTGTGCCCAGCTTCTTTATTTTATTATTATTATTATTATTTTTTGAGACAGAGTTTTGCTCTGTAGCCCAGGCTGGAGTGCAGTGTTGTGATCTCAGCTCACTGCAACCTCTGCTTCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGGTTACAGGTGTGCACCACCACGCCCAGCTAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACTGAGTTTTGCTCTTCTTGCCCAGGCTGGAGCGCAGTGGCCCCATCTTGGCTCACTGCCACCTCCACCTCCCAGGTTCAAGCCGGTTCTCCTGCTTCAGCCTCTTGAGTAGCTGGGATTACAGGTGCGTGCCACCACACCCAGCTGATTTTTGTGTTTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCACCCATCTCGGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCAAGAAAACATTCTTAACTTTGTGGGAGGTAAAAAGATGCAATGATTCTCAGTCTGGGGTCTAAGATTTTTGCTTAGCAAATGGTCCATGGGTTGAAAAAGGTAGAGAAAATGTGGCTTAAAGCCCTAAGTCTGAGAGTGACCTGTCCACCTCCCAGGTTCTGGGTCCTCTCCTGGGCTGGCTGGCCAGAGATGTTTCCGCTCGCAGGGCCCCTGGTAGGCAGAGGGTCTGTGGGTGTGGGGCTGCCTGCTGGCGGGCAGATGCAGAGGCCTGGGGCCTGATTCCAGGCCTGGGGTTCCAGAGGCAAGCTTTGCTCCTGCCTCCTCCCCCATGGACGCTCTTCTTGAGTGCATTTCTGCATGTTCCCGTGTGCACGTTCTCTTATCTGACTTGGTCATCTGTCTCTTAG
Seq C2 exon
CTCTGTGGAGGGGCCCTCTGGTATGTGTGTCCCTGTCCTTCTGGGGCGTGGATGGTGCCTGGGACCCAGCTGGCAACCAGTTGAAGACGTTCTCCTTGGAAGCTCTTGGCCCTGAGGACTTTGCCTGGGGCATTGGCCCTGCCATGGCGTTCCGGAGGGCCGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-FAM73B:NM_032809:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.9=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)