MmuEX0039253 @ mm9
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37240766-37253876:-
Coord C1 exon
chr2:37253764-37253876
Coord A exon
chr2:37245105-37245294
Coord C2 exon
chr2:37240766-37240980
Length
190 bp
Sequences
Splice sites
3' ss Seq
AAATGTCATTTCTGTCATAGGAA
3' ss Score
7.3
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCACAGCCAAACAGCAAGTATAAAACTAGTATGTGCCGAGATTTACGACAACAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAA
Seq A exon
GAAGTACTGAAACAACTGGGAAAATTGTTGCAAGTACAAATGGAATTTCAAATACAGAAAGCAGTGTTTCTCAGCTAATCCCACGAGGCACTGACAGTGCAGTAAGGACTTTGGAGACTGTGAAGAAAGTCGGGAAGGTTGGCACTAATGCTCAGAATGCTGGGCCCTCTGCAGAGTCCGTGTCTGAAAA
Seq C2 exon
TAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGCAGCAGCTACCTCCGCTGGGCCCTCTAATTTTGGAACAGAGCTGAATTCCCTGCCTCCCAAATCCAGCCCATTTCTAACTAGAGTTCCAGTATATCCTCAGCATTCTGAAAGCATTCAGTATTTTCAAGATCCAAGGACTCAGATACCTTTTGAAGTCCCACAATACCCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.670 C2=0.945
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATTCTCAGGAAGAGCT
R:
CTGTTTGTGGGTATTGTGGGACT
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: