GgaEX6015572 @ galGal4
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8791945-8793916:-
Coord C1 exon
chr17:8793804-8793916
Coord A exon
chr17:8792894-8793202
Coord C2 exon
chr17:8791945-8792159
Length
309 bp
Sequences
Splice sites
3' ss Seq
GTTTACATGTTTGTTTGTAGATA
3' ss Score
8
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCACAACCAAATAGCAAATACAAAACAAGTATGTGCCGAGACCTTCGACAGCAAGGGGGATGTCCAAGAGGAACCAACTGTACGTTCGCTCATTCTCAGGAAGAGCTTGAAAA
Seq A exon
ATATCGCTTGAGGAACAAAAAAATCAGTGCAACAGTGAGAACATTCCCCCTTCTAAATAAAGTTGGCGTTAATAGCACCGTCTCAACCACTACAGGAAGCGTAATTTCTGTCATAGGAAGCCCTGAAGCAACAGTGAAGATGGTGCCAAGTACTAATGGAATAGCTAATTTAGAAAGTGGTGTTCCCCAATTGATCCCTCGCTGTGCAGACACCTCCCTAAGAGCTTTGGAGAACACCAAGAAGGCAGGGAAGAGTGGAGCCAATGGCCAGAATGTTTCTGGATCCCCTACAGAATCACTACCTGAAAA
Seq C2 exon
TAAAATTGGTTCTCCACCCAAGACTCCTGTAAGCCAGGCAGCAGCTACCTCAGCTGGTCCTCCTAATATTGGAACAGAAGTTAATTCTGTGCCTCCAAAATCCAGCCAGTTTGTTCCCAGAGTACCTGTTTACCCTGCACATTCTGATAACGTTCAGTATTTCCAAGATCCCAGAACTCAGCTGTCGTATGAAGTTCCACAGTACCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=0.635 C2=0.945
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAACCAAATAGCAAATACAAAAC
R:
TGTCTGTGGGTACTGTGGAACT
Band lengths:
327-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]