RnoEX0074852 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21637298-21651249:-
Coord C1 exon
chr3:21651137-21651249
Coord A exon
chr3:21641730-21642035
Coord C2 exon
chr3:21637298-21637512
Length
306 bp
Sequences
Splice sites
3' ss Seq
TGCTGATTATTTTTAAACAGGTA
3' ss Score
8.19
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCACAGCCAAACAGCAAGTATAAAACTAGTATGTGCCGAGATTTACGACAACAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAA
Seq A exon
GTACCGATTAAGGAACAAAAAGATGAGCGCGACTGTAAGAACATTTCCTCTTCTGAATAAAGTTGCTGTAAACAGCACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACTGGGAAAATTGTTCCAAGTACAAATGGAATTTCAAATACAGAAAGCAGTGTTTCCCAGCTAATCCCACGAAGTGCTGACAGTGCAGGAAGGACTTTGGAGACTGTGAAGAAAGTTGGGAAAGTTGGCACTAATGGTCAGAATGCTGGGCCCTCTGCAGAGTCTGTGTCTGAAAA
Seq C2 exon
TAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGCAGCAGCTACCTCCGCTGGGCCCTCTAATTTTGGAACAGAGCTGAATTCCCTGCCTCCCAAATCCAGCCCATTTCTAACTCGAGTTCCAGTATATCCTCAGCATTCTGAAAACATCCAGTATTTTCAAGATCCAAGGACTCAGATACCTTTTGAAGTCCCACAATACCCACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.728 C2=0.945
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCAAACAGCAAGTAT
R:
TGTTTGTGGGTATTGTGGGACT
Band lengths:
327-633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]