DreEX6087235 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9788152-9794102:+
Coord C1 exon
chr10:9788152-9788264
Coord A exon
chr10:9793237-9793479
Coord C2 exon
chr10:9793957-9794102
Length
243 bp
Sequences
Splice sites
3' ss Seq
CATCTTTCTATCTCTTTCAGGCA
3' ss Score
11.35
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCTCAACCCAACAGCAAGTACAAAACAAGTATGTGCAGGGACTTACGGCAGCAAGGCGGCTGCCCGAGAGGAGCCAGCTGTACATTTGCCCACACGCAAGAGGAGTTGGAGAA
Seq A exon
GCACAGAATGAGAAATAGGAAAGCTAGTGGGGCGGTGAGGCCGTTTCTGTCAGTTCCAGCAGTGATGGCCAAATCTTGCACCAAGGCAGGGTCAGAGGTAGGCCCCGGAGGGATAAAGAACCATGAGAAAGATGCCTCAGAGGACGTGTCTCCAACTCAGCTCATCCCTAGAGGAGGAGACCAGCAGGAGGACAAAATGCTGCTCAGTGGTGTTAACGGATTGCATGTGACCAGCCTAGAACA
Seq C2 exon
GAATCTTGGCAGTCACAGCCAGTCTCCTTCCATATCTTCAGTGATGTCTACAGACAGACACGGGCATGTCCAGATGAGGGCTCACCCTGAGTACTGCTCTCAGGACCAGAGACCATATGAGCTGACACCCTACCCTCAGTCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.841 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACCCAACAGCAAGTAC
R:
GGACTGAGGGTAGGGTGTCAG
Band lengths:
255-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]