HsaEX0052845 @ hg19
Exon Skipping
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:21461]
Coordinates
chr9:125622196-125639862:-
Coord C1 exon
chr9:125639750-125639862
Coord A exon
chr9:125627628-125627820
Coord C2 exon
chr9:125622196-125622410
Length
193 bp
Sequences
Splice sites
3' ss Seq
AAATGTCATTTCTGTCATAGGAA
3' ss Score
7.3
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCTCAGCCAAACAGCAAATACAAGACTAGCATGTGCCGAGATTTGCGACAGCAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAA
Seq A exon
GAAGTACTGAAACAACAGGGAAAATTGTTCCAAGTACAAACGGAATTTCAAATGCAGAAAACAGTGTTTCCCAGCTAATCTCACGTAGTACTGACAGTACCTTAAGAGCTCTGGAGACCGTGAAGAAAGTGGGAAAGGTTGGCGCTAATGGTCAGAATGCTGCTGGGCCCTCTGCAGATTCTGTAACTGAAAA
Seq C2 exon
TAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGTAGCAGCTACCTCAGCTGGGCCCTCTAATGTTGGAACAGAGCTGAATTCTGTGCCTCAAAAATCCAGCCCATTTCTAACTAGAGTACCAGTATATCCTCCGCATTCTGAAAACATTCAGTATTTTCAAGATCCAAGGACTCAGATACCCTTTGAAGTCCCACAGTACCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586_MULTIEX3-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.587 C2=0.945
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=PD(19.2=78.9),PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATTCTCAGGAAGAGCT
R:
CTGTCTGTGGGTACTGTGGGA
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)