MmuEX0026643 @ mm9
Exon Skipping
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74358391-74367858:-
Coord C1 exon
chr2:74367688-74367858
Coord A exon
chr2:74366149-74366231
Coord C2 exon
chr2:74358391-74360354
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTATCTAATCTAGGAG
3' ss Score
9.52
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
Seq A exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAGTGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
Seq C2 exon
ACTCTTTAGAAGAACAAGATGTTCTTGATAATAGTACTGAGCAGAGAGATGACAAAATACCAGTTACAGAGCAGACAAGCCAAGTGATTGAAAAAACATCTGGTCCAGAGGAGCCAGCAGAGAACCAAGAAGAGACTGAGAACGAGGAAACCTCAACAAACGAAGCCAAGTCACCTGTTCTCAGAGCTGATTCTGTTCCTAATCTTGAACCAAGTGAAGAATCTTTGGTGACAAAGTAGTAAATACTTCCATGTGCCTTCAACTGGATATTTGTAGTCTTGTTGATGTTAGTTACTGCTTTTTTTTTTTTTTTTGTGGTACTCAAGAAAAATTTGCCTTCTAGATATACGCTTAATATTATTCATATTCAGATTGCCCAGCAAGTTCAGTGTATCCAAGTACTACCACTAGGTATTGACAGTAAAAGCACGTGGTATCAGTTAATATGCAGAGGCATAGCTGTGCATTCTAAAGTTAAAAAAATGTTTTTTACATGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.483 A=0.000 C2=0.983
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCTCAACTGGTCCCAC
R:
GGCTCCTCTGGACCAGATGTT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types