HsaEX0034244 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176788620-176802242:-
Coord C1 exon
chr2:176802072-176802242
Coord A exon
chr2:176800436-176800518
Coord C2 exon
chr2:176788620-176794927
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATCCTTCTCATCTAATCTAGGAG
3' ss Score
8.86
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAACCCTGCAAGAAAAACCAGACCTCAGGCTCCAAGACTTCCTGAGTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCTTGCCATCAGGAAGTGTGCTTTCATCAGACAACCAGTTTAATGAAG
Seq A exon
GAGGAGCAATACCCCAGACGTCTCATTTTCTGTCTGAAATTCCTGGAAAGAAGTCTTACTGGCTCAAACCCAACCCCAATAAG
Seq C2 exon
AATCTTTAGAACACGATGTTCTTGATGATAATACAGAGCAGACAGATGACAAAATACCAGCTACAGAACAGACAAACCAAGTGATTGAAAAAGCATCTGACTCAGAGGAACCAGAGGAGAAACAAGAGACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAACTCCACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTTGACGGCAGAGTAGTAAATGCTTCCACGTGCCTTCAACTGGATATTTATAGTCTTACTGATGTCAGTTATTGCTTTTTCGGTGGCACTTACTTTTTTTGCCCCTCTAAGGGTATGCTTGTGTATCATTTGAATTCAGATTGCCTAGCTATTTGAACATCTCAAAGTTATATATACTGGGTATTAAAATTAAAAGCAAGTTATATCAGTGAAGTAAGATCCTTTTGAATGTACAAAGACCCACACTATTGAGACAGCTTTTAGATACTTTTTTGTCCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'21-27,'21-25,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.989
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGTTGGTCCCTTGCCAT
R:
TGGTTCCTCTGAGTCAGATGCT
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)