RnoEX0050299 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61433863-61441868:-
Coord C1 exon
chr3:61441698-61441868
Coord A exon
chr3:61440161-61440243
Coord C2 exon
chr3:61433863-61434067
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTCATCTAATCTAGGAG
3' ss Score
9.64
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCCCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTAGAAGGCTCAAGTTCAACTGGTCCCATGTTACTAGAAAGTGTGCCCTCACCAGAAAACCAGCTCACTGAAG
Seq A exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAATGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
Seq C2 exon
ACTCTTTAGAAGAACAAGATGATCTTGATAATAGTACTGAGCAGAAAGATGACAAAATACCAGTTACAGAGCAGACAAACCAAGTGATTGAAGAAACATCTGGTCCAGAGGGGTCAGAAGAGAACCAAGAAGAGACTGAGAACGAGGAAACATCGACAAATGAAGCCAAGTCACCTGTTCTCAGATCTGATTCTGTTTCTAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAAGTTCAACTGGTCCC
R:
GACCCCTCTGGACCAGATGTT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]