RnoALTA0022184-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61440161-61441868:-
Coord C1 exon
chr3:61441698-61441868
Coord A exon
NA
Coord C2 exon
chr3:61440161-61440243
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTCCTTCTCATCTAATCTAGGAG
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCCCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTAGAAGGCTCAAGTTCAACTGGTCCCATGTTACTAGAAAGTGTGCCCTCACCAGAAAACCAGCTCACTGAAG
Seq A exon
NA
Seq C2 exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAATGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-24-18,24-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAAGTTCAACTGGTCCC
R:
TACTGGGGTTCACTTTGAGCC
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]