MmuALTA0010117-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74366149-74367858:-
Coord C1 exon
chr2:74367688-74367858
Coord A exon
NA
Coord C2 exon
chr2:74366149-74366231
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTCCTTCTTATCTAATCTAGGAG
3' ss Score
9.52
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
Seq A exon
NA
Seq C2 exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAGTGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-27-25,27-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCGATGTGCCTACTGTTT
R:
CTTACTGGGGTTCACTTTGAGCC
Band lengths:
254-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: