MmuEX0026643 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74520334-74529801:-
Coord C1 exon
chr2:74529631-74529801
Coord A exon
chr2:74528092-74528174
Coord C2 exon
chr2:74520334-74522297
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTATCTAATCTAGGAG
3' ss Score
9.52
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
Seq A exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAGTGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
Seq C2 exon
ACTCTTTAGAAGAACAAGATGTTCTTGATAATAGTACTGAGCAGAGAGATGACAAAATACCAGTTACAGAGCAGACAAGCCAAGTGATTGAAAAAACATCTGGTCCAGAGGAGCCAGCAGAGAACCAAGAAGAGACTGAGAACGAGGAAACCTCAACAAACGAAGCCAAGTCACCTGTTCTCAGAGCTGATTCTGTTCCTAATCTTGAACCAAGTGAAGAATCTTTGGTGACAAAGTAGTAAATACTTCCATGTGCCTTCAACTGGATATTTGTAGTCTTGTTGATGTTAGTTACTGCTTTTTTTTTTTTTTTTGTGGTACTCAAGAAAAATTTGCCTTCTAGATATACGCTTAATATTATTCATATTCAGATTGCCCAGCAAGTTCAGTGTATCCAAGTACTACCACTAGGTATTGACAGTAAAAGCACGTGGTATCAGTTAATATGCAGAGGCATAGCTGTGCATTCTAAAGTTAAAAAAATGTTTTTTACATGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.448 A=0.000 C2=0.975
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCTCAACTGGTCCCAC
R:
GGCTCCTCTGGACCAGATGTT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types