BtaEX0019305 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:21003252-21047519:+
Coord C1 exon
chr2:21003252-21003422
Coord A exon
chr2:21004963-21005045
Coord C2 exon
chr2:21047436-21047519
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTCATCTAATCTAGGAG
3' ss Score
9.64
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
CTTTTCGTTGTGCCTACTGTTTTTTCTTGAATCCTGCTAGAAAAACCAGACCCCAGGCTCCAAGACTTCCAGAATTTAGTTTTGAAAAGAGGCAGGCATTGGAAGTCTCAAATACAGTTGGTTCCTTGCCCTCAGAAAGTGTAATTTCATCAGAGAACCAGATCAATGAAG
Seq A exon
GAGGAGCAATACCCCAGATGTCTCATTTTCTGTCAGAAACCTCCGGAATGAAGTCTAACTGGCTCAAACTCAACCCTAATAAG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAAACAGCTAAATTAATTCTTGAAAGGTTTGATCCAGATTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061_MULTIEX2-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.454 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF100584=DUF2296=PD(19.6=17.2)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000024045fB3648
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGCAGGCATTGGAAGT
R:
TGCTTTCTTTGAATCTGGATCAAACC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development