BtaEX0019304 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:21002411-21047519:+
Coord C1 exon
chr2:21002411-21002481
Coord A exon
chr2:21003252-21003422
Coord C2 exon
chr2:21047436-21047519
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAATTCTCTACAGCTT
3' ss Score
9.98
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTACGCCCTTATATGTCAGCAGTGTTTTTCTCACAATGGCATGGCTTTGAAAGAAGAATTTGAGTACATTG
Seq A exon
CTTTTCGTTGTGCCTACTGTTTTTTCTTGAATCCTGCTAGAAAAACCAGACCCCAGGCTCCAAGACTTCCAGAATTTAGTTTTGAAAAGAGGCAGGCATTGGAAGTCTCAAATACAGTTGGTTCCTTGCCCTCAGAAAGTGTAATTTCATCAGAGAACCAGATCAATGAAG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAAACAGCTAAATTAATTCTTGAAAGGTTTGATCCAGATTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061_MULTIEX2-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.454 C2=NA
Domain overlap (PFAM):
C1:
PF100584=DUF2296=FE(47.1=100)
A:
PF100584=DUF2296=PD(19.6=17.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCCTTATATGTCAGCAGT
R:
TTTGCTTTCTTTGAATCTGGATCA
Band lengths:
154-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development