DreEX0043334 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2040737-2044714:+
Coord C1 exon
chr9:2040737-2040810
Coord A exon
chr9:2041060-2041215
Coord C2 exon
chr9:2043798-2044714
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTCATCGTCCGTGTTTTAGCAT
3' ss Score
8.09
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
CAGATATGCCCTGATATGCCAGCAGTGTTTGTCTCATAACGGCATGGCTTTAAAGGAGGAGTTTGAATATATCG
Seq A exon
CATTCAGATGTGCCTACTGCTATTTCCTGAACCCGGCCCGGAAGACGCGTCCCCAGGCCCCGCGGCTCCCAGAATTCGCTGCAGAAGCCAAGACGAGCCAAGACCCTCCTGCTGTTGCCAAGCAGACGGACCTGCCTGTCTCTCCATCTGCCCCAG
Seq C2 exon
AGAGTAAAGAAGCAGGTCCAGAGCCTGTAAAAGCTGAAGATGGAGATCCACAAACAGATGAGATCCCGACAGAAGAGATGAAACCAGGAGACCCAGAGCCACACACCGATATCCCGGACAAATCTGACGAAGAACAGGACGTGTCCGCTATGGAGGTGGAGTAGAGTGAGAAAAAGCCAACATAAACCTGTCTGTTCATCATGTGTGTGTGTGTGTGTGTGTGTGTTTGCTTTTTCATATTAGGTTATTAGTTTACGTTAGTTTTAATTTCTTCACATTATTATTATTATTATTATTATTAATGCAGTGTTACTTTATGGATTAGCAATATGAATGGTTCCGGGGTCAAAGGGTTTTTGTAAAGTTCAATGCTGATATGTCTGCAGTAATGTTACATTTGTGAGTTTAGTACTGGTAAAATAGTTTATCTTTGTTTACATGTATGAAAAAGGTTTTTTTGCATCACTTTTAGTTGGCCAGAAAAGCAGCTGTTGACGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'23-29,'23-25,24-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.679 C2=1.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=FE(55.6=100)
A:
PF100584=DUF2296=PD(22.2=18.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCATGGCTTTAAAGGAGG
R:
ACACACACACACACACACACA
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]