GgaEX6042250 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15898789-15908061:+
Coord C1 exon
chr7:15898789-15898859
Coord A exon
chr7:15900095-15900265
Coord C2 exon
chr7:15905653-15908061
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTGGATGTGCTTTTGTGCAGCAT
3' ss Score
5.69
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTATGCCCTTATATGTCAGCAATGTTGTTCTCACAATGGTATGGCTCTGAAGGAGGAGTTTGAATACGTAG
Seq A exon
CATTTAGGTGTGCCTACTGCTTTTTCCTGAATCCTGCAAGAAAAACGAGACCTCGGGCTCCACGGCTACCAGATTTCAATTTTGAAAAGAAGCAACTTCCAGAATTGCAATCGGAAGCAGAGCGTCCAGAATCAAGAGAGAGAGAACCGCAGGGGAATCAGCAGACAGAAG
Seq C2 exon
AATCTGAAGGAGTGGCTCAGCAAATTGAGACAAATGAGACAGATGAGAAAGCACCAAGTGCTGAGCAGTTGAATGATAGTCTTGTTGAAGAAGTTGAAAAAGAAGCAGCAGAAAATGTTTCAACAACCGAAGACTCTATTTCAGATTCTGCTATTTCAACTGAACAAAGTGAAGAATCTTTAGTGAAAGCAGAATAAAGTACTTCAAGTGCCTTCTGTAGCTAGTTTTTAGCTTTGTTCATGCCTGTTGTTACTATTCAGGTGAGCTTTTTTAAATGGTACAACTTAAAAATCTCGCTTGAGCTTAAACTGCCTCAACTGTCACAGTATGTCAAAGCTTTGTGTAAAAGTGGATATTGTAAATTAAGCATGTCTTTAAGTTAACTCACAGAATGTATAGTTGGTTGAAGTCTAACAGTCATAGACATTGTTCACTTTGCATATTTGAAAAATCAAACTTTTAAGTTTTATTAAAGGTGACCTACAACTTGGCATCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'24-29,'24-24,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.690 C2=1.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=FE(47.1=100)
A:
PF100584=DUF2296=PD(19.6=17.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATGGCTCTGAAGGAGGA
R:
AGGCACTTGAAGTACTTTATTCTGCT
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]