MmuEX6102222 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74520334-74537501:-
Coord C1 exon
chr2:74537304-74537501
Coord A exon
chr2:74529631-74529801
Coord C2 exon
chr2:74520334-74522297
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAAAAAAAAATTCTATGCAGCTT
3' ss Score
3.51
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCCCCAGCACCAGCAAGCTCTAGTCAGGGTCCTCCTCCACAAGGTCCAGTGTCTCCTGGGCCAGCGAAGGACGCTTCAGCTCCTGGGGGACCGCCAGAAAGAACTGTTGCTCCAGCCTTGCCCAGGCGCCTTGGATCCCCTGCTACTTCAGTTCCTGGAATGG
Seq A exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
Seq C2 exon
ACTCTTTAGAAGAACAAGATGTTCTTGATAATAGTACTGAGCAGAGAGATGACAAAATACCAGTTACAGAGCAGACAAGCCAAGTGATTGAAAAAACATCTGGTCCAGAGGAGCCAGCAGAGAACCAAGAAGAGACTGAGAACGAGGAAACCTCAACAAACGAAGCCAAGTCACCTGTTCTCAGAGCTGATTCTGTTCCTAATCTTGAACCAAGTGAAGAATCTTTGGTGACAAAGTAGTAAATACTTCCATGTGCCTTCAACTGGATATTTGTAGTCTTGTTGATGTTAGTTACTGCTTTTTTTTTTTTTTTTGTGGTACTCAAGAAAAATTTGCCTTCTAGATATACGCTTAATATTATTCATATTCAGATTGCCCAGCAAGTTCAGTGTATCCAAGTACTACCACTAGGTATTGACAGTAAAAGCACGTGGTATCAGTTAATATGCAGAGGCATAGCTGTGCATTCTAAAGTTAAAAAAATGTTTTTTACATGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.448 C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
PF100584=DUF2296=PD(19.6=17.2)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGCAAGCTCTAGTCAG
R:
CACTTGGCTTGTCTGCTCTGT
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types