MmuEX6102222 @ mm9
Exon Skipping
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74366149-74368633:-
Coord C1 exon
chr2:74368563-74368633
Coord A exon
chr2:74367688-74367858
Coord C2 exon
chr2:74366149-74366231
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAAAAAAAAATTCTATGCAGCTT
3' ss Score
3.51
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GTACGCCCTCATATGTCAGCAGTGTTTTTCTCACAATGGCATGGCTTTGAAGGAAGAATTTGAATATATTG
Seq A exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCTCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTGGAAGGCTCAAGCTCAACTGGTCCCACGCTACTAGAAAGTGTGCCCTCAGCAGAAAGCCAGCTCATTGAAG
Seq C2 exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAGTGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'26-25,'26-23,27-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.483 C2=0.000
Domain overlap (PFAM):
C1:
PF100584=DUF2296=FE(47.1=100)
A:
PF100584=DUF2296=PD(19.6=17.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCCTCATATGTCAGCA
R:
CTTACTGGGGTTCACTTTGAGCC
Band lengths:
154-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: