RnoEX6017448 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61440161-61442652:-
Coord C1 exon
chr3:61442582-61442652
Coord A exon
chr3:61441698-61441868
Coord C2 exon
chr3:61440161-61440243
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTAAAAAATTTTCTGTGCAGCTT
3' ss Score
7.4
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GTACGCCCTCATATGTCAGCAGTGTTTTTCTCACAATGGTATGGCTTTGAAGGAAGAATTTGAATATATTG
Seq A exon
CTTTTCGATGTGCCTACTGTTTTTTCTTGAATCCTGCAAGAAAAACGAGACCTCAAGCCCCACGGCTTCCAGAGTTTAGTTTTGAGAAGAGGCAGGCAGTAGAAGGCTCAAGTTCAACTGGTCCCATGTTACTAGAAAGTGTGCCCTCACCAGAAAACCAGCTCACTGAAG
Seq C2 exon
GAGGAACAATACCTCAGATGTCTCATTTTCTATCTGAAATCTCCGGAATGAAGTCTAACTGGCTCAAAGTGAACCCCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'22-18,'22-15,24-18=AN
Average complexity
A_C3
Mappability confidence:
90%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.603 C2=0.071
Domain overlap (PFAM):
C1:
PF100584=DUF2296=FE(47.1=100)
A:
PF100584=DUF2296=PD(19.6=17.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCCTCATATGTCAGCA
R:
CTTACTGGGGTTCACTTTGAGCC
Band lengths:
154-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]