MmuALTA0008005-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32161293-32161603:+
Coord C1 exon
chr2:32161293-32161400
Coord A exon
NA
Coord C2 exon
chr2:32161502-32161603
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGAG
5' ss Score
-0.52
3' ss Seq
CTGCCGTCTCCACAGGAGAGTAC
3' ss Score
-11.49
Exon sequences
Seq C1 exon
AGCCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGAGGGTAGAGGAGCTTGAACATTGCTGCATTCAGCTTTCTGGAGAGACAGACACCATTGGTGAG
Seq A exon
NA
Seq C2 exon
TACATTGCCCTTTACCAAAATCAGAGGGCGGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAATACATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-34-38,34-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(5.3=100)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTTGAACATTGCTGCA
R:
CAGCACCGCCCTCTGATTTT
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: