MmuALTD0006142-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32161295-32161603:+
Coord C1 exon
chr2:32161295-32161395
Coord A exon
NA
Coord C2 exon
chr2:32161497-32161603
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
CCTGCCTGCCGTCTCCACAGGAG
3' ss Score
10.96
Exon sequences
Seq C1 exon
CCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGAGGGTAGAGGAGCTTGAACATTGCTGCATTCAGCTTTCTGGAGAGACAGACACCATTG
Seq A exon
NA
Seq C2 exon
GAGAGTACATTGCCCTTTACCAAAATCAGAGGGCGGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAATACATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-33-37,34-37-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(5.7=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTTGAACATTGCTGCA
R:
CAGCACCGCCCTCTGATTTT
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: