MmuEX0020612 @ mm9
Exon Skipping
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25650664-25666575:-
Coord C1 exon
chr2:25666528-25666575
Coord A exon
chr2:25650931-25651122
Coord C2 exon
chr2:25650664-25650801
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTATATTGATTAGCTG
3' ss Score
3.2
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
Seq A exon
CTGTAATCAGAGCTCAGGAGGAAGAGAACACACAGTCTGAGGCTCGACTGACTTTGCCAGCTCAGCCACTCACTAGTTGTGTGCCCACATGAAGAACAAGAAGAAAGCTAGCAGTCATCTGGGGACGGGCATTGCCAGGGTCATGTGAGCAAGTGAGGGCTCCGCACATCTGACTGCTCAGTGCCATCTCAG
Seq C2 exon
GAGACGCCTGGATGTCATCACGACCACAGACTGGCTGGCCCCCATCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGACATATTTCAGGAAGCAGAACATCACCGTGGGTTTGGCTGTGTTTGCTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.5=100)
A:
NO
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACCAGGAAGAGGAACT
R:
AACAGCAAACACAGCCAAACC
Band lengths:
181-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: